Center for Genome Regulation

A FONDAP Center of Excellence

"Exploring the Genomic Landscape of Chile"

2020 Publications

ISI Papers


Swift J, Alvarez J, Araus A, Gutiérrez RA, Coruzzi GM. (2019) Modeling the genome-wide transcription kinetics underlying nutrient dose sensing in Arabidopsis roots. Proc. Natl. Acad. Sci. Accepted.

Ruffel S, Chaput V, Przybyla-Toscano J, Fayos I, Ibarra C, Moyano TC, Fizames C, Tillard P, O’Brien JA, Gutiérrez RA, Gojon A, Lejay L. (2019). Genome wide analysis in response to N and C identifies new regulators for root AtNRT2 transporters. Plant Phys. Accepted.

Vidal EA, Álvarez JM, Araus V, Riveras E, Brooks MD, Krouk G, Ruffel S, Lejay L, Crawford NM, Coruzzi GM and Gutiérrez RA. 2020. Nitrogen 2020: Thirty years, from nitrate transport to signaling networks. Plant Cell. Accepted

Pollak B, Matute T, Nuñez I, Cerda A, Lopez C, Vargas V, Kan A, Bielinski V, von Dassow P, Dupont CL, Federici F. 2020. Universal Loop assembly (uLoop): open, efficient, and cross-kingdom DNA fabrication. Synthetic Biology 5(1) ysaa001. https://doi.org/10.1093/synbio/ysaa001.

Travisany D, Goles E, Latorre, Cortés MP, Maass A. 2019. Generation and robustness of Boolean networks to model Clostridium difficile infection. Natural Computing.

Muñoz M, Matute T, Nuñez I, Valdes A, Ruiz C, Vidal G, Federici F, Rudge T. 2020. Phase space characterization for gene circuit design. Biorxiv doi: https://doi.org/ 10.1101/590299

Drahomíra Faktorová, R. Ellen R. Nisbet, José A. Fernández Robledo, Elena Casacuberta, Lisa Sudek, Andrew E. Allen, Manuel Ares Jr., Cristina Aresté, Cecilia Balestreri, Adrian C. Barbrook, Patrick Beardslee, Sara Bender, David S. Booth, François-Yves Bouget, Chris Bowler, Susana A. Breglia, Colin Brownlee, Gertraud Burger, Heriberto Cerutti, Rachele Cesaroni, Miguel A. Chiurillo, Thomas Clemente, Duncan B. Coles, Jackie L. Collier, Elizabeth C. Cooney, Kathryn Coyne, Roberto Docampo, Christopher L. Dupont, Virginia Edgcomb, Elin Einarsson, Pía A. Elustondo, Fernan Federici, Veronica Freire-Beneitez, Nastasia J. Freyria, Kodai Fukuda, Paulo A. García, Peter R. Girguis, Fatma Gomaa, Sebastian G. Gornik, Jian Guo, Vladimír Hampl, Yutaka Hanawa, Esteban R. Haro-Contreras, Elisabeth Hehenberger, Andrea Highfield, Yoshihisa Hirakawa, Amanda Hopes, Christopher J. Howe, Ian Hu, Jorge Ibañez, Nicholas A.T. Irwin, Yuu Ishii, Natalia Ewa Janowicz, Adam C. Jones, Ambar Kachale, Konomi Fujimura-Kamada, Binnypreet Kaur, Jonathan Z. Kaye, Eleanna Kazana, Patrick J. Keeling, Nicole King, Lawrence A. Klobutcher, Noelia Lander, Imen Lassadi, Zhuhong Li, Senjie Lin, Jean-Claude Lozano, Fulei Luan, Shinichiro Maruyama, Tamara Matute, Cristina Miceli, Jun Minagawa, Mark Moosburner, Sebastián R. Najle, Deepak Nanjappa, Isabel C. Nimmo, Luke Noble, Anna M.G. Novák Vanclová, Mariusz Nowacki, Isaac Nuñez, Arnab Pain, Angela Piersanti, Sandra Pucciarelli, Jan Pyrih, Joshua S. Rest, Mariana Rius, Deborah Robertson, Albane Ruaud, Iñaki Ruiz-Trillo, Monika A. Sigg, Pamela A. Silver, Claudio H. Slamovits, G. Jason Smith, Brittany N. Sprecher, Rowena Stern, Estienne Swart, Anastasios Tsaousis, Lev Tsypin, Aaron Turkewitz, Jernej Turnšek, Matus Valach, Valérie Vergé, Peter von Dassow, Tobias von der Haar, Ross F. Waller, Lu Wang, Xiaoxue Wen, Glen Wheeler, April Woods, Huan Zhang, Thomas Mock, Alexandra Z. Worden, Julius Lukeš. 2020. Genetic tool development in marine protists: Emerging model organisms for experimental cell biology. Nature Methods doi: 10.1038/s41592-020-0796-x

Nuñez-Lillo G, Balladares C, Pavez C, Urra C, Sanhueza D, Vendramin E, Dettori MT, Arús P, Verde I, Blanco-Herrera F, Campos-Vargas R, Meneses C. 2019. High-density genetic map and QTL analysis of soluble solid content, maturity date, and mealiness in peach using genotyping by sequencing. Scientia Horticulturae 257:108734. https://doi.org/10.1016/j.scienta.2019.108734.

Varas MA, Muñoz-Montecinos C, Kallens V, Simon V, Allende ML, Marcoleta AE and Lagos R. 2020. Exploiting Zebrafish Xenografts for Testing the in vivo Antitumorigenic Activity of Microcin E492 Against Human Colorectal Cancer Cells. Front. Microbiol. 11:405. doi: 10.3389/fmicb.2020.00405.


     

Mandakovic D, Cintolesi A Maldonado J, Mendoza S, Aïte M, Gaete A, Saitua F, Allende ML, Cambiazo V, Siegel A, Maass A, González M, Latorre M. 2020. Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment. Sci Rep 10, 5560 (2020). https://doi.org/10.1038/s41598-020-62130-8.

     

Cappelli C, Sepulveda H, Rivas S, Pola V, Urzúa U, Donoso G, Sagredo E, Carrero D, Casanova-Ortiz E, Sagredo A, González M, Manterola M, Nardocci G, Armisén R, Montecino M, Marcelain K. 2020. Ski Is Required for Tri-Methylation of H3K9 in Major Satellite and for Repression of Pericentromeric Genes: Mmp3, Mmp10 and Mmp13, in Mouse Fibroblasts. J Mol Biol. pii: S0022-2836(20)30234-5. doi: 10.1016/j.jmb.2020.03.013.

     

Jury N, Abarzua S, Diaz I, Guerra MV, Ampuero E, Cubillos P, Martinez P, Herrera-Soto A, Arredondo C, Rojas F, Manterola M, Rojas A, Montecino M, Varela-Nallar L, van Zundert B. 2020. Widespread loss of the silencing epigenetic mark H3K9me3 in astrocytes and neurons along with hippocampal-dependent cognitive impairment in C9orf72 BAC transgenic mice. Clin Epigenetics. 12(1):32. doi: 10.1186/s13148-020-0816-9.


Guerrero-Araya, E; Meneses, C; Castro-Nallar, E; Guzmán, D; Álvarez-Lobos, M; Quesada-Gómez, C; Paredes-Sabja, D; Rodríguez, C. 2020. Origin, genomic diversity and microevolution of the Clostridium difficile B1/NAP1/RT027/ST01 strain in Costa Rica, Chile, Honduras and Mexico. Microb Genom. doi: 10.1099/mgen.0.000355.

     

     Dufey, E., Bravo-San Pedro, J.M., Eggers, C. et al. Genotoxic stress triggers the activation of IRE1α-dependent RNA decay to modulate the DNA damage response. Nat Commun 11, 2401 (2020). https://doi.org/10.1038/s41467-020-15694-y


     Cumplido N, Allende ML, Arratia G. 2020. From Evo to Devo: Patterning, Fusion and Evolution of the Zebrafish Terminal Vertebra. Frontiers in Zool. 17:18. doi: 10.1186/s12983-020-00364-y.

     

Covello, G; Rossello, FJ; Filosi, M; Gajardo, F; Domenici, E; Duchemin, A-L; Tremonti, FB; Eichenlaub, M; Polo, JM; Powell, D; Allende, ML; Ngai, J; Ramialison, M; Poggi, L. 2020. Transcriptome analysis of the zebrafish atoh7-/- mutant, lakritz, highlights Atoh7-dependent genetic networks with potential implications for human eye diseases. FASEB BioAdvances https://doi.org/10.1096/fba.2020-00030.

     

Moreno S, Canales J, Hong L, Robinson D, Roeder AHK, Gutiérrez RA. 2020. Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana. Curr Biol. S0960-9822(20)30374-2. doi: 10.1016/j.cub.2020.03.036.

     

Riveras E, Azocar L, Moyano TC, Ocares M, Molina H, Romero D, Roa JC, Valbuena JR, Gutiérrez RA, Miquel JF. Transcriptomic profiles reveal differences in zinc metabolism, inflammation, and tight junction proteins in duodenum from cholesterol gallstone subjects. Sci Rep. 2020 May 4;10(1):7448. doi: 10.1038/s41598-020-64137-7.

     

Verdugo RA, Di Genova A, Herrera L, Moraga M, Acuña M, Berríos S, Llop E, Valenzuela CY, Bustamante ML, Digman D, Symon A, Asenjo S, López P, Blanco A, Suazo J, Barozet E, Caba F, Villalón M, Alvarado S, Cáceres D, Salgado K, Portales P, Moreno-Estrada A, Gignoux CR, Sandoval K, Bustamante CD, Eng C, Huntsman S, Burchard EG, Loira N, Maass A, Cifuentes L. Development of a small panel of SNPs to infer ancestry in Chileans that distinguishes Aymara and Mapuche components. Biol Res. 2020 Apr 16;53(1):15. doi: 10.1186/s40659-020-00284-5.

     

Peskin B, Henke K, Cumplido N, et al. Notochordal Signals Establish Phylogenetic Identity of the Teleost Spine [published online ahead of print, 2020 Jun 13]. Curr Biol. 2020;S0960-9822(20)30724-7. doi:10.1016/j.cub.2020.05.037


Mandakovic D, Pulgar R, Maldonado J, et al. Fungal Diversity Analysis of Grape Musts from Central Valley-Chile and Characterization of Potential New Starter Cultures. Microorganisms. 2020;8(6):E956. Published 2020 Jun 24. doi:10.3390/microorganisms8060956

     

Aravena P, Pulgar R, Ortiz-Severín J, et al. PCR-RFLP Detection and Genogroup Identification of Piscirickettsia salmonis in Field Samples. Pathogens. 2020;9(5):358. Published 2020 May 8. doi:10.3390/pathogens9050358

     

Aguila-Torres P, Maldonado J, Gaete A, et al. Biochemical and Genomic Characterization of the Cypermethrin-Degrading and Biosurfactant-Producing Bacterial Strains Isolated from Marine Sediments of the Chilean Northern Patagonia. Mar Drugs. 2020;18(5):252. Published 2020 May 13. doi:10.3390/md18050252


     



Non-ISI

Manual de biofabricación con hongos. Protocolos de libre acceso; licencia Creative Commons Atribución-CompartirIgual 4.0 Internacional (CC BY-SA 4.0) http://biofab.cl/2019/05/19/manualde-biofabricacion-con-hongos/