Center for Genome Regulation

A FONDAP Center of Excellence

"Exploring the Genomic Landscape of Chile"

2019 Publications

ISI Papers


1.     Morales RA, Allende ML. 2019. Peripheral Macrophages Promote Tissue Regeneration in Zebrafish by Fine-tuning the Inflammatory Response. Front. Immunol. 10:253. doi: 10.3389/fimmu.2019.00253.


     2.     Young RM, Hawkins TA, Cavodeassi F, Stickney HL, Schwarz Q, Lawrence LM, Wierzbicki C, Cheng BYL, Luo J, Ambrosio E, Klosner A, Sealy IM, Rowell J, Trivedi C, Bianco I, Allende ML, Busch- Nentwich EM, Gestri G, Wilson SM. 2019. Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification. Elife. 8. pii: e40093. doi: 10.7554/eLife.40093.


     3.     Del Pozo T, Miranda S, Latorre M, Olivares F, Pavez L, Gutiérrez R, Maldonado J, Hinrichsen P, Defilippi BG, Orellana A, Gonzalez M. 2019. Comparative transcriptome profiling in a segregating peach population with contrasting juiciness phenotypes. J Agric Food Chem. doi: 10.1021/acs.jafc.8b05177. 


4. Heirendt L, Arreckx S, Pfau T, Mendoza SN, Richelle A, Heinken A, Haraldsdóttir HS, Wachowiak J, Keating SM, Vlasov V, Magnusdóttir S, Ng CY, Preciat G, Žagare A, Chan SHJ, Aurich MK, Clancy CM, Modamio J, Sauls JT, Noronha A, Bordbar A, Cousins B, El Assal DC, Valcarcel LV, Apaolaza I, Ghaderi S, Ahookhosh M, Ben Guebila M, Kostromins A, Sompairac N, Le HM, Ma D, Sun Y, Wang L, Yurkovich JT, Oliveira MAP, Vuong PT, El Assal LP, Kuperstein I, Zinovyev A, Hinton HS, Bryant WA, Aragón Artacho FJ, Planes FJ, Stalidzans E, Maass A, Vempala S, Hucka M, Saunders MA, Maranas CD, Lewis NE, Sauter T, Palsson BØ, Thiele I, Fleming RMT. 2019. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0. Nat Protoc. 14(3):639-702. doi: 10.1038/s41596-018-0098-2.

     

5. Fernández-Gómez B, Maldonado J, Mandakovic D, Gaete A, Gutiérrez RA, Maass A, Cambiazo V, González M. 2019. Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils. Sci Rep. 2019 Jan 31;9(1):1042. doi: 10.1038/s41598-018-37776-0.

     

6. Díaz FP, Latorre C, Carrasco-Puga G, Wood JR, Wilmshurst JM, Soto DC, Cole TL, Gutiérrez RA. 2019. Multiscale climate change impacts on plant diversity in the Atacama Desert. Glob Chang Biol. 2019 Jan 31. doi: 10.1111/gcb.14583.

     

7. Bustos BI, Pérez-Palma E, Buch S, Azócar L, Riveras E, Ugarte GD, Toliat M, Nürnberg P, Lieb W, Franke A, Hinz S, Burmeister G, von Schönfels W, Schafmayer C, Völzke H, Völker U, Homuth G, Lerch MM, Santos JL, Puschel K, Bambs C, Roa JC, Gutiérrez RA, Hampe J, De Ferrari GV, Miquel JF. 2019. Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry. Sci Rep. 9(1):772. doi: 10.1038/s41598-018-35852-z.

     

8. Aedo G, Miranda M, Chavez MN, Allende ML, Egaña JT. 2019. A reliable preclinical model to study the impact of cigarette smoke in physiology and disease. Current Protocols in Toxicology. e78. doi: 10.1002/cptx.78.

     

9. Brooks MD, Cirrone J, Pasquino AV, Swift J, Alvarez JM, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM (2019). Network Walking charts transcriptional pathways for dynamic nitrogen signaling using validated and predicted genome-wide interactions. Nature Comm. 10(1):1569. doi: 10.1038/s41467-019-09522-1.

     

10. Maza F, Maldonado J, Vásquez-Dean J, Mandakovic D, Gaete A, Cambiazo V, González M. 2019. Soil Bacterial Communities From the Chilean Andean Highlands: Taxonomic Composition and Culturability. Front Bioeng Biotechnol. 7:10. doi: 10.3389/fbioe.2019.00010.

     

11. Vergara-Pulgar C, Rothkegel K, González-Agüero M, Pedreschi R, Campos-Vargas R, Defilippi BG, Meneses C. 2019. De novo assembly of Persea americana cv. 'Hass' transcriptome during fruit development. BMC Genomics. 20(1):108. doi: 10.1186/s12864-019-5486-7.

     

12. Varas MA, Ortíz-Severín J, Marcoleta AE, Santiviago CA, Allende ML, Chávez FP. 2019. Static Immersion and Injection Methods for Live Cell Imaging of Foodborne Pathogen Infections in Zebrafish Larvae. Methods Mol Biol. 1918:183-190. doi: 10.1007/978-1-4939-9000-9_15.

     

13. Anguita-Salinas C, Sánchez M, Morales RA, Ceci ML, Rojas-Benítez D, Allende ML. 2019. Cellular dynamics during spinal cord regeneration in larval zebrafish. Dev. Neurosci. (In Press).

     

14. Miranda M, Egaña JT, Allende ML, Eblen-Zajjur, A. 2019. Myocardial transmembrane action potential recorded by suction electrode for ionic current studies in zebrafish. Zebrafish (In Press).

     

15. Latorre M, Burkhead JL, Hodar C, Arredondo M, González M, Araya M. 2019. Chronic copper treatment prevents the liver critical balance transcription response induced by acetaminophen. J Trace Elem Med Biol. 53:113-119. doi: 10.1016/j.jtemb.2019.02.007.

     

16. Gavicho Uarrota V, Fuentealba C, Hernández I, Defilippi-Bruzzone B, Meneses C, Campos-Vargas R, Lurie S, Hertog M, Carpentier S, Poblete-Echeverría C, Pedreschi R. 2019. Integration of proteomics and metabolomics data of early and middle season Hass avocados under heat treatment. Food Chem. 289:512-521. doi: 10.1016/j.foodchem.2019.03.090.

     

17. Quesille-Villalobos AM, Parra A, Maza F, Navarrete P, González M, Latorre M, Toro M, Reyes-Jara A. 2019. The Combined Effect of Cold and Copper Stresses on the Proliferation and Transcriptional Response of Listeria monocytogenes. Front Microbiol. 10:612. doi: 10.3389/fmicb.2019.00612.





Non-ISI


Salazar MP, Valenzuela D, Tironi M, Gutiérrez RA (2019). The construction of a regulatory style for genetically modified crops in Chile. Tapuya: Latin American Science, Technology and Society.