Center for Genome Regulation

A FONDAP Center of Excellence

"Exploring the Genomic Landscape of Chile"

2018 Publications

1.     Marcoleta AE, Varas MA, Ortiz-Severín J, Vásquez L, Berríos-Pastén C, Sabag AV, Chávez FP, Allende ML, Santiviago CA, Monasterio O, Lagos R. 2018. Evaluating Different Virulence Traits of Klebsiella pneumoniae Using Dictyostelium discoideum and Zebrafish Larvae as Host Models. Frontiers in Cellular and Infection Microbiology. 8:30. DOI=10.3389/fcimb.2018.00030  .


     2.     Mardones W, Di Genova A, Cortés MP, Travisany D, Maass A & Eyzaguirre J. 2018. The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes. Mycology. DOI=10.1080/21501203.2017.1419995

     

3. Cortés MP, Mendoza SN, Travisany D, Gaete A, Siegel A, Cambiazo V, Maass A.  2018. Analysis of Piscirickettsia salmonis Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing. Front Microbiol. 2017 Dec 11;8:2462. doi: 10.3389/fmicb.2017.02462.

     

4. Contreras-López O, Moyano TC, Soto DC, Gutiérrez RA. 2018. Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data. Methods Mol Biol. 2018;1761:275-301. doi: 10.1007/978-1-4939-7747-5_21.

     

5. Contreras EG, Sierralta J, Glavic A. 2018. p53 is required for brain growth but is dispensable for resistance to nutrient restriction during Drosophila larval development. PLoS One 13(4):e0194344. doi: 10.1371/journal.pone.0194344.


6. Gutierrez-Urrutia I, Miossec MJ, Valenzuela SL, Meneses C, Dos Santos VAPM, Castro-Nallar E, Poblete-Castro I. 2018. Genome sequence of two members of the chloroaromatic-degrading MT community: Pseudomonas reinekei MT1 and Achromobacter xylosoxidans MT3. J Biotechnol. 275:13-16. doi: 10.1016/j.jbiotec.2018.03.019. 


7. Mandakovic D, Rojas C, Maldonado J, Latorre M, Travisany D, Delage E, Bihouée A, Jean G, Díaz FP, Fernández-Gómez B, Cabrera P, Gaete A, Latorre C, Gutiérrez RA, Maass A, Cambiazo V, Navarrete SA, Eveillard D & González M. 2018. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Sci Rep. 8:5875. DOI:10.1038/s41598-018-23931-0


8. Cifuentes-Esquivel N, Celiz-Balboa J, Henriquez-Valencia C, Mitina I, Arraño-Salinas P, Moreno AA, Meneses C, Blanco-Herrera F, Orellana A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J Cell Biochem. doi: 10.1002/jcb.26882.


9. Nardocci G, Carrasco ME, Acevedo E, Hodar C, Meneses C, Montecino M. 2018. Identification of a novel long noncoding RNA that promotes osteoblast differentiation. J Cell Biochem. 2018 May 28. doi: 10.1002/jcb.27113.

     

10. Di Genova A, Ruz GA, Sagot MF, Maass A. 2018. Fast-SG: an alignment-free algorithm for hybrid assembly. Gigascience. 7(5). doi: 10.1093/gigascience/giy048

     

11. Aite M, Chevallier M, Frioux C, Trottier C, Got J, Cortés MP, Mendoza SN, Carrier G, Dameron O, Guillaudeux N, Latorre M, Loira N, Markov GV, Maass A, Siegel A.  2018. Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models. PLoS Comput Biol. 14(5):e1006146. doi: 10.1371/journal.pcbi.1006146.

     

12. Cifuentes-Esquivel N, Celiz-Balboa J, Henriquez-Valencia C, Mitina I, Arraño-Salinas P, Moreno AA, Meneses C, Blanco-Herrera F, Orellana A. 2018. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J Cell Biochem. doi: 10.1002/jcb.26882.

     

13. Hodar C, Cambiazo V. 2018. The dorsoventral patterning of Musca domestica embryos: insights into BMP/Dpp evolution from the base of the lower cyclorraphan flies. Evodevo. 9:13. doi: 10.1186/s13227-018-0102-5.

     

14. Mandakovic D, Maldonado J, Pulgar R, Cabrera P, Gaete A, Urtuvia V, Seeger M, Cambiazo V, González M. 2018. Microbiome analysis and bacterial isolation from Lejía Lake soil in Atacama Desert. Extremophiles. 22(4):665-673. doi: 10.1007/s00792-018-1027-6.

     

15. Cabezas CE, Briones AC, Aguirre C, Pardo-Esté C, Castro-Severyn J, Salinas CR, Baquedano MS, Hidalgo AA, Fuentes JA, Morales EH, Meneses CA, Castro-Nallar E, Saavedra CP.  2018. The transcription factor SlyA from Salmonella Typhimurium regulates genes in response to hydrogen peroxide and sodium hypochlorite. Res Microbiol. doi: 10.1016/j.resmic.2018.04.003.

     

16. Zúñiga A, Fuente F, Federici F, Lionne C, Bônnet J, de Lorenzo V, González B. 2018. An Engineered Device for Indoleacetic Acid Production under Quorum Sensing Signals Enables Cupriavidus pinatubonensis JMP134 To Stimulate Plant Growth. ACS Synth Biol. 7(6):1519-1527. doi: 10.1021/acssynbio.8b00002.


17. Araya HF, Sepulveda H, Lizama CO, Vega OA, Jerez S, Briceño PF, Thaler R, Riester SM, Antonelli M, Salazar-Onfray F, Rodríguez JP, Moreno RD, Montecino M, Charbonneau M, Dubois CM, Stein GS, van Wijnen AJ, Galindo MA.  2018. Expression of the ectodomain-releasing protease ADAM17 is directly regulated by the osteosarcoma and bone-related transcription factor RUNX2. J Cell Biochem. doi: 10.1002/jcb.26832.

     

18. González-Itier S, Contreras EG, Larraín J, Glavic Á, Faunes F. 2018. A role for Lin-28 in growth and metamorphosis in Drosophila melanogaster. Mech Dev. doi: 10.1016/j.mod.2018.06.002.