Center for Genome Regulation

A FONDAP Center of Excellence

"Exploring the Genomic Landscape of Chile"

2014 Publications

1.     Edwards S, Zavala G, Prieto CP, Elliott M , Martínez S, Egaña T, Bono MR, Palma V. 2014. Functional Analysis Reveals Angiogenic Potential of Human Mesenchymal Stem Cells from Wharton's Jelly in Dermal Regeneration. Angiogenesis.17:851-866.

     2.     Reckhenrich AK, Kirsch BM, Schenck TL, Rezaeian F, Harder F, Foehr P, Machens HG, Egaña JT. Surgical Sutures Filled with Adipose-derive Stem Cells Promote Wound Healing. PLoS ONE. 9:e91169.

     3.     Zaidi SK, Grandy, R, Lopez-Camacho C, Montecino M, van Wijnen AJ, Lian JB, Stein JL, Stein GS. 2014. Bookmarking target genes in mitosis: a shared epigenetic trait of phenotypic transcription factors and oncogenes. Cancer Research. 74:420-425.

     4.     Tai PWL, Zaidi SK,  Wu H, Grandy RA, Montecino M, van Wijnen AJ, Lian JB, Stein GS, Stein JL. 2014. The dynamic architectural and epigenetic nuclear landscape: Developing the genomic almanac of biology and disease,Journal of Cellular Physiology. 229:711-7272.

     5.     Bustos F, Varela-Nallar L, Campos M, Henríquez B, Phillips M, Opazo C, Aguayo LG, Montecino M, Constantine-Paton M, Inestrosa NC, van Zundert. 2014. B,PSD-95 suppresses dendritic arbor development in mature hippocampal neurons by occluding the clustering of NR2B-NMDA receptors. PLoS One. e94037.

     6.     Downarowicz T, Travisany D, Montecino M, Maass A. 2014. Symbolic extensions applied to multiscale structure of genomes. Acta Biotheoretica. 62: 145-169.

     7.     Aguilar R, Grandy R, Sepúlveda H, Meza D, Pihan P, van Wijnen AJ, Lian JB, Stein GS, Stein JL, Montecino M. 2014. A functional N-terminal domain in C/EBPb-LAP* is required for interacting with SWI/SNF and to repress Ric-8B gene transcription in osteoblasts. Journal of Cellular Physiology. 229:1521-1528.

     8.     Dudakovic A, Camilleri ET, Lewallen EA, McGee-Lawrence ME, Riester SM, Kakar S, Montecino M, Stein GS, Ryoo H-M, Dietz H, Westendorf JJ, van Wijnen AJ. 2014. Histone deacetylase inhibition destabilizes the multi-potent state of uncommitted adipose-derived mesenchymal stromal cells. Journal of Cellular Physiology. 230:56-62.

     9.     Assar R, Montecino M, Maass A, Sherman D. 2014. Modeling acclimatization by hybrid systems: condition changes alter biological system behavior models. Biosystems.121.43-53.

     10.     Travisany D, Cortés MP, Latorre M, Di Genova A, Budinich M, Bobadilla-Fazzini RA, Parada P, González M, Maass A. 2014. A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment. Research in Microbiology. 165:743-752.

     11.     Arismendi MJ, Almada R, Pimentel P, Bastias A, Salvatierra A, Rojas P, Hinrichsen P, Pinto M, Di Genova A,  Travisany D, Maass A,  Sagredo B, Travisany D, Maass A, Sagredo B. 2014. Transcriptome sequencing of Prunus sp. rootstocks roots to identify candidate genes involved in the response to root hypoxia. Tree Gentics and Genomes. In Press.

     12.     Rautergarten C, Ebert B, Moreno I, Temple H, Herter T, Link B, Doñas D, Moreno A, Saez-Agüayo S, Blanco F, Mortimer J, Schutink A, Rieter W, Dupree P, Pauly M, Haezlewood JL, Scheller HV, Orellana A. 2014. The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. PNAS 111:11563-11568.

     13.     Balic I, Ejsmentewicz T, Sanhueza D, Silva C, Peredo T, Olmedo P, Barros M, Verdonk JC, Paredes R, Meneses C, Prieto H, Orellana A, Defilippi B G, Campos-Vargas R. 2014. Biochemical and physiological study of the firmness of table grape berries. Postharvest Biology and Technology. 93:15-23.

     14.     Alvarez JM, Riveras E, Vidal EA, Gras DE, Contreras-López O, Tamayo KP, Aceituno F, Gómez I, Ruffel S, Lejay L, Jordana X, Gutiérrez RA. 2014. Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots.2014. The Plant Journal. 80:1-13.

     15.     Canales J, Moyano TC, Villarroel E, Gutiérrez RA . 2014. Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. Frontiers in Plant Science. 5:22.

     16.     Vidal EA, Moyano TC, Canales J, Gutiérrez RA. 2014. Nitrogen control of developmental phase transitions in Arabidopsis thaliana. Journal of Experimental Botany. 65:5611-5618.

     17.     Busso D, Oñate-Alvarado MJ, Balboa E, Castro J, Lizama C, Morales G, Vargas S, Hartel S, Moreno R and Zanlungo S. 2014. Spermatozoa from mice deficient in Niemann-Pick disease type C2 (NPC2) protein have defective cholesterol content and reduced in vitro fertilising ability. Reproduction, Fertility and Development. 26:609-621.

     18.     Marín T,  Contreras P, Castro JF, Chamorro D, Balboa E,  Bosch-Morató M,    Muñoz F, Alvarez A, Zanlungo S. 2014. Vitamin E Dietary Supplementation Improves Neurological Symptoms and Decreases c-Abl/p73 Activation in Niemann-Pick C Mice. Nutrients. 6:3000-3017.

     19.     Argüello G, Martínez P, Peña J, Chen O, Platt F, Zanlungo S, González M. 2014. Hepatic metabolic response to restricted copper intake in a Niemann-Pick C murine model. Metallomics. 6:1527-1539.

     20.     Lange S, González I, Pinto MP, Arce M, Valenzuela R, Aranda E, Elliot M, Alvarez M, Henriquez S, Velasquez EV, Orge F, Oliva B, González P, Villalón M, Cautivo KM, Kalergis AM, Pereira K, Mendoza C, Sáez C, Kato S, Cuello MA, Parborell F, Irusta G, Palma V, Allende ML, Owen GI. 2014. Independent anti-angiogenic capacities of coagulation factors X and Xa. J Cell Physiol. 229: 1673-1680.

     21.     Ceci ML, Mardones-Krsulovic C, Sánchez M, Valdivia LE, Allende ML. 2014.  Axon-Schwann cell interactions during peripheral nerve regeneration in zebrafish larvae. Neural Dev. 9.22.

     22.     Hodar C , Zuñiga A, Pulgar R, Travisany D, Chacon C, Pino M, Maass A,   Cambiazo V. 2014. Comparative gene expression analysis of Dtg, a novel target gene of Dpp signaling pathway in the early Drosophila melanogaster embryo. Gene. 535 : 210-217.

     23.     Vieira Milreu P, Coimbra Klein C , Cottret L, Acuña V, Birmele E, Borassi M, Junot C, Marchetti-Spaccamela A, Marino A, Stougie L, Jourdan F, Crescenzi P, Lacroix V, Sagot MF. 2014. Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinformatics. 30:61-70.

     24.     Di Genova A, Miyasaka Almeida A, Muñoz-Espinoza C, Vizoso P, Travisany D, Moraga C, Pinto M, Hinrichsen P, Orellana A, Maass A. 2014. Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants. BMC Plant Biology.14:7-18.

     25.     Zimmer A,  Durand C,  Loira N,  Durrens P, Sherman DJ, Marullo P. 2014. QTL Dissection of Lag Phase in Wine Fermentation Reveals a New Translocation Responsible for Saccharomyces cerevisiae Adaptation to Sulfite. Plos One.9:e86298.1-11.

     26.     Galagovsky D, Katz MJ, Acevedo JM, Sorianello E, Glavic A, Wappner P. 2014. The Drosophila insulin-degrading enzyme restricts growth by modulating the PI3K pathway in a cell-autonomous manner. Molecular Biology of the Cell. 25 (6):916-924.

     27.     De Ferrari GV, Avila ME, Medina MA, Pérez-Palma E, Bustos BI, Alarcón MA. 2014. Wnt/beta-catenin signaling in Alzheimer's disease. CNS Neurol Disord Drug Targets.13(5):745-754.

     28.     Pérez-Palma E, Bustos BI, Villamán CF, Alarcón MA, Avila ME, Ugarte GD, Reyes AE, Opazo C, De Ferrari GV. 2014. Alzheimer's Disease Neuroimaging Initiative NIA LOAD/NCRAD Family Study Group,Overrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies. PLoS One. 9(4):e95413.

     29.     Avilés EC, Pinto C, Hanna P, Ojeda J, Pérez V, De Ferrari GV, Zamorano P, Albistur M, Sandoval D, Henríquez JP. 2014. Frizzled-9 impairs acetylcholine receptor clustering in skeletal muscle cells. Front Cell Neurosci. 8,e110.

     30.     Castro PA, Ramírez A, Sepúlveda FJ, Peters C, Fierro H, Waldron J, Luza S, Fuentealba J, Muñoz FJ, De Ferrari GV, Bush AI, Aguayo LG, Opazo CM. 2014. Copper-uptake is critical for the down regulation of synapsin and dynamin induced by neocuproine: modulation of synaptic activity in hippocampal neurons. Front Aging Neuros. 6: e319.

     31.     Assar R, Montecino M, Maass A, Shermana DJ. 2014. Modeling acclimatization by hybrid systems: Condition changes alter biological system behavior models. Biosystems. 121.00:43-53

     32.      Hodar C, Zuñiga A, Pulgar R, Travisany D, Chacon C, Pino M, Maass A,   Cambiazo V. 2014. Comparative gene expression analysis of Dtg, a novel target gene of Dpp signaling pathway in the early Drosophila melanogaster embryo. Gene. 535:210-217.

     33.     Latorre M, Galloway-Peña J, de Jung HR,  Budinich M, Reyes-Jara A,   Murray B E, Maass A, González M. 2014. Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels. Metallomics. 6:572-581.

     34.     Abarca F, Gutiérrez-Maldonado SE, Parada P, Martínez P, Maass A,  Pérez-Acle T. 2014. Insights on the structure and stability of Licanantase: a trimeric acid-stable coiled-coil lipoprotein from Acidithiobacillus thiooxidans. PeerJ. e457.