Center for Genome Regulation

A FONDAP Center of Excellence

"Exploring the Genomic Landscape of Chile"

2013 Publications

1.     Martínez P, Gálvez S, Ohtsuka N, Budinich M, Corté́s MP, Serpell C, Nakahigashi K, Hirayama A, Tomita M, Sog T, Martínez S, Maass A, Parada P. 2013. Study of Chilean biomining bacteria Acidithiobacillus ferrooxidans strain Wenelen and Acidithiobacillus thiooxidans strain Licanantay. Metabolomics. 9: 247-257.

     2.     Bórquez D, Olmos C, Álvarez S, Di Genova A, Maass A, González-Billault .C. 2013. Bioinformatic survey for new physiological substrates of Cyclin-dependent kinase 5. Genomics.101: 221-228.

     3.     Utreras E, Henríquez D, Contreras-Vallejos E, Olmos C, Di Genova A, Maass A, Kulkarni A.B, González-Billault Ch. 2013. Cdk5 regulates Rap1 activity through phosphorylation of C3G.Neurochemistry International. 62:848-853.

     4.     Bobadilla-Fazzini R, Cortés M.P., Padilla L , Maturana  D, Budinich M,  Maass A, Parada P. 2013. Stoichiometric Modeling of Oxidation of Reduced Inorganic Sulfur Compounds (RISCs) in Acidithiobacillus thiooxidans. Biotechnology and Bioengineering. 110:  2242-2251.

     5.     Sharma K, Di Genova A, Maass A, Bryan GJ. 2013. Construction of reference chromosome-scale pseudomolecules for potato: Integrating the potato genome with genetic and physical maps. G3-Genes, Genomes and Genetics. 3.20131-2047.

     6.     Rojas-Benítez D, Ibar C, Glavic A,The Drosophila EKC/KEOPS complex.2013. Roles in protein synthesis homeostasis and animal growth. Fly (Austin). 7:168-172.

     7.     Ibar C, Cataldo VF, Vasquez-Doorman C, Olguín P, Glavic A. 2013. Drosophila p53-related protein kinase is required for PI3K/TOR pathway-dependent growth. Development.  140: 1282-1291.

     8.     Espina J, Feijoo CG, Solís C, Glavic A. 2013. csrnp a is necessary for the development of primitive hematopoiesis progenitors in zebrafish. Plos One.8: e53858.

     9.     Milla LA, Arros A., Espinoza N, Remke M, Kool M, Taylor MD, Pfister SM, Wainwright BJ, Palma V. Neogenin is a Sonic Hedgehog target in medulloblastoma and is necessary for cell cycle progression. International Journal of Cancer. 134: 21-31.

     10.     Martínez M, Cornejo VH, Lois P, Solis N, Palma V. 2013. Proliferation of murine midbrain neural stem cells depends upon an endogenous Sonic Hedgehog (Shh) source. PLoS ONE 8:10.1371.

     11.     Reinchisi G, Parada M, Lois L, Oyanedel C, Shaughnessy R, González A, Palma V. 2013. Hedgehog modulates EGFR dependent proliferation of Neural Stem Cells during late mouse embryogenesis through EGFR-mediated Transactivation. Frontiers in Cellular Neuroscience. 7:1-11.

     12.     Nilo-Poyanco R, Olivares D, Orellana A, Hinrichsen P, Pinto M. 2013. Proteomic analysis of grapevine (Vitis vinifera L.) leaf changes induced by transition to autotrophy and exposure to high light irradiance. Journal of Proteomics 91:303-30.

     13.     Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E , Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P,  Del Fabbro C,  Aramini V, Copetti D,  González S,  Horner D.S., Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A , Testolin R , Stella A , Tartarini S , Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS. 2013. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics. 45(5): 487-94

     14.     Meneses C, Orellana A. 2013. Using Genomics To Improve Fruit Quality, Biological Research. Accepted.

     15.     González-Agüero M, García-Rojas M, Di Genova A, Correa J, Maass A,  Orellana A, Hinrichsen P. 2013. Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry and related tissues derived from RNA-Seq data. BMC Genomics. 14: 878.

     16.     Alarcón MA, Medina MA, Hu Q, Avila ME, Bustos BI, Pérez-Palma E , Peralta A, Salazar P, Ugarte GD, Reyes AE, Martin GM, Opazo C, Moon RT, De Ferrari GV. 2013. A novel functional low-density lipoprotein receptor-related protein 6 gene alternative splice variant is associated with Alzheimer's disease. Neurobiology of Aging.14(6): e9-18.

     17.     Hodar C,  Zúñiga A, Pulgar R, Travisany D,  Chacon C, Pino  M,  Maass A, Cambiazo V. 2013. Comparative gene expression analysis of Dtg, a novel target gene of Dpp signaling pathway in the early Drosophila melanogaster embryo. Gene. DOL.10:106.

     18.     Pavez  L,  Hödar  C, Olivares F, González M.  Cambiazo V. 2013. Effects of postharvest treatments on gene expression in Prunus persica fruit: Normal and altered ripening. Postharvest Biology and Technology. 75:125-134.

     19.     Sáez PJ, Orellana JA, Vega-Riveros A, Figueroa VA, Hernández DE, Castro JF, Klein AD, Jiang JX, Zanlungo S, Sáez JC. 2013. Disruption in Connexin-Based Communication Is Associated with Intracellular Ca2+ Signal Alterations in Astrocytes from Niemann-Pick Type C Mice. PLOS One.8: 71361.

     20.     Gutiérrez-García R, Del Pozo T, Suazo M, Cambiazo V, González M. 2013. Physiological copper exposure in Jurkat cells induces changes in the expression of genes encoding cholesterol biosynthesis proteins. Biometals. 6: 1033-1040.

     21.     Ruiz LM, Jensen EL, Bustos RI, Graciela Argüello G, Gutiérrez-García R, González M, Hernández C, Paredes R, Simon F, Riedel C, Ferrick D, Elorza AA. 2013. Adaptive responses of mitochondria in mice under mild copper deprivation involve changes in morphology, OXPHOS remodeling, and bioenergetics.,J Cellular Physiology DOI. 10: 1002.

     22.     Ugarte G, Diaz  E, Biscaia  M, Stehberg J, Montecino M, van Zundert B. 2013. Transcription of the pain-related TRPV1 gene requires Runx1 and C/EBPb factors. J. Cell. Physiol. 228: 60-870.

     23.     Bravo S, Nuñez F, Cruzat, F, Cafferata E, De Ferrari G, Montecino M, Podhajcer O. 2013. Enhanced CRAd activity using artificial enhancers including nucleosome positioning sequences and Wnt-responsive elements. Mol. Ther. 21.1403-1412

     24.     Henriquez B, Bustos  F, Aguilar R, Becerra A, Simon F, Montecino M, van Zundert B. 2013. Polycomb group proteins Ezh1 and Ezh2 differentially regulate PSD-95 gene expression in developing hippocampal neurons. Mol. Cell. Neurosc. 57: 130-143.

     25.     Vidal EA, Moyano TC, Riveras E, Contreras-López O, Gutiérrez, RA . 2013. Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots. Proc. Natl Acad. Sci. 110: 12840-12845.

     26.     Pereira E, Oliva M, Rosado-Sousa L, Mendes GS, Collares D, Stopato -Carlos H, Miyasaka A. 2013. Tropical rice cultivars from lowland and upland cropping systems differ in iron plaque formation. Plant Science. 201-202.81-92.

     27.     von Kampen O, Buch S, Nothnagel M, Azocar L, Molina et al. 2013. Genetic and Functional Identification of the Likely Causative Variant for Cholesterol Gallstone Disease at the ABCG5/8 Lithogenic Locus. Hepatology 57:2407-2417.

     28.     Krawczyk M,  Miquel JF, Stokes C, Zuniga S, Hampe J, Mittal B, Lammert F. 2013. Genetics of biliary lithiasis from an ethnic perspective. Clinics and Research in Hepatology and Gastroenterology. 37:119-125.

     29.     Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie R, Coruzzi GM, Gutiérrez RA. 2013. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics. 14:701-730.

     30.     Zúñiga A, Poupin MJ, Donoso R, Ledger T, Guiliani N, Gutiérrez RA , González B. 2013. Quorum sensing and 3-indole acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN. Mol Plant Micr Int. 26:546-553.

     31.     Federici F, Rudge T, Pollak B, Haseloff J, Gutiérrez RA. 2013 Synthetic Biology: opportunities for Chilean bioindustry and education. Biol Res. 46.